PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4247_p4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 193aa    MW: 21006.8 Da    PI: 6.2664
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4247_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-1381122955
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++rRR++iN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  RrC4247_p4  81 DKRRRSKINEKMKALQKLIPNS-----NKTDKASMLDEAIEYLKQLQ 122
                 59*******************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.972121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-1478127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-1181122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1681129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1681129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.45E-1482126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010047Biological Processfruit dehiscence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGSSDDGHSL PTPCSSDELS SILRQILSRA PTTQPSSPPK RNVSSAEMFD RNFLFVSGGA  60
VSTAAGYAVA ENGEDKCAFE DKRRRSKINE KMKALQKLIP NSNKTDKASM LDEAIEYLKQ  120
LQLQVQTLAV MNGLGLNPLR LPPVRAPTQT RMISGTLEQD LNFETLLGAP HSLANHEPSE  180
ATQEMCFSTA TLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393909.11e-96hypothetical protein EUTSA_v10004889mg
SwissprotQ9FHA22e-89ALC_ARATH; Transcription factor ALC
TrEMBLV4K0422e-96V4K042_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.8__2705__AT5G67110.11e-88(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139821724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.12e-80bHLH family protein